Nextflow workflow report

[NRG-GY003_crams]

Workflow execution completed unsuccessfully!

The exit status of the task that caused the workflow execution to fail was: null.

The full error message was:

SIGTERM
Run times
03-Jul-2025 18:55:09 - 06-Jul-2025 18:54:42 (duration: 2d 23h 59m 33s)
  3307 succeeded  
  0 cached  
  0 ignored  
  9 failed  
Nextflow command
nextflow run 'https://github.com/nf-core/sarek' -name NRG-GY003_crams -params-file 'https://api.cloud.seqera.io/ephemeral/vsBv9j4Jfj6axzw4C2_FLQ.json' -with-tower 'https://api.cloud.seqera.io' -r ae4dd11acc8b7e13fd6d4d45a92ff29a8e2b958d -profile singularity
CPU-Hours
1'517.6 (1% failed)
Launch directory
/sc/arion/projects/NGSCRC/Work/Seqera
Work directory
/sc/arion/projects/NGSCRC/Work/Seqera
Project directory
/sc/arion/projects/NGSCRC/Work/Seqera/.nextflow/pipelines/f83b9b1a/nf-core/sarek
Script name
main.nf
Script ID
3954909713023f4328e976337e6e2cb9
Workflow session
aa0889b3-2262-4c90-8eff-62054a9be265
Workflow repository
https://github.com/nf-core/sarek, revision 3.5.0 (commit hash ae4dd11acc8b7e13fd6d4d45a92ff29a8e2b958d)
Workflow profile
singularity
Nextflow version
version 24.04.4, build 5917 (01-08-2024 07:05 UTC)

Resource Usage

These plots give an overview of the distribution of resource usage for each process.

CPU

Memory

Job Duration

I/O

Tasks

This table shows information about each task in the workflow. Use the search box on the right to filter rows for specific values. Clicking headers will sort the table by that value and scrolling side to side will reveal more columns.

(tasks table omitted because the dataset is too big)